chore: refresh the knowledge graph after the seeding and batching work

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

graphify-out/.graphify_labels.json

@@ -1475,5 +1475,11 @@
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 }

graphify-out/manifest.json

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@@ -7835,8 +7835,8 @@
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@@ -8010,13 +8010,13 @@
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