chore: refresh the knowledge graph after the segment-merge work

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>

graphify-out/manifest.json

@@ -7070,8 +7070,8 @@
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   "docs/new_feture/taskes/task-05-appointment-plan/database.md": {
@@ -7990,8 +7990,8 @@
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   "src/Appointment/Plan/ValueObject/AppointmentPlan.php": {
@@ -8010,13 +8010,13 @@
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   "migrations/Version20260730174147.php": {
@@ -8055,8 +8055,8 @@
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